Publications

Google Scholar Profile

Journal Publications

  • Erinc Hallacli, Can Kayatekin, Sumaiya Nazeen, Xiou H. Wang, Zoe Sheinkopf, Shubhangi Sathyakumar, Souvarish Sarkar, Xin Jiang, Xianjun Dong, Roberto DiMaio, Wen Wang, Matthew T. Keeney, Daniel Felsky, Jackson Sandoe, Aazam Vahdatshoar, Namrata D. Udeshi, DR Mani, Steven A. Carr, Susan Lindquist, Philip L. de Jager, David P. Bartel, Chad L. Myers, Timothy J. Greenamyre, Mel B. Feany, Shamil Sunyaev, Chee Yeun Chung, and Vikram Khurana. "The Parkinson’s disease protein alpha-synuclein is a direct modulator of RNA Processing-bodies and mRNA stability". Cell 2022, 185(12): 2035-2056.e33.
  • Pavan K. Bendapudi, Sumaiya Nazeen, Justine Ryu, Onuralp Söylemez, Betty Rouaisnel, Meaghan Colling, Bryce Pasko, Alissa Robbins, Michael Bouzinier, Lindsay Tomczak, Lindsay Collier, Sanjay Ram, Agnes Toth-Petroczy, Joel Krier, Elizabeth Fieg, Walter H. Dzik, James C. Hudspeth, Olga Pozdnyakova, Valentina Nardi, Richard Maas, Shamil Sunyaev, and Julie-Aurore Losman. "Pathway-based Rare Variant Burden Analysis Identifies a Role for the Complement System in an Extreme Phenotype of Sepsis with Coagulopathy". under review at JCI 2022. medRxiv:
  • Noah Connally, Sumaiya Nazeen, Daniel Lee, Huwenbo Shi, John Stamatoyannopoulos, Sung Chun, Chris Cotsapas, Christopher Cassa, and Shamil Sunyaev. "The missing link between genetic association and regulatory function". under review at eLife. 2021. medRxiv: https://doi.org/10.1101/2021.06.08.21258515
  • Sumaiya Nazeen, Yun William Yu, and Bonnie Berger. "Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads". Genome Biology 2020, 21(1): 47
  • Sumaiya Nazeen†, Nathan P Palmer†, Bonnie Berger*, and Isaac S Kohane*, "Integrative analysis of genetic datasets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities", Genome Biology 2016, 17(1): 228
  • Sumaiya Nazeen, M. Sohel Rahman, and Rezwana Reaz, "Indeterminate String Inference Algorithms", Journal of Discrete Algorithms 2012, 10: 23-34
  • Tanaeem M. Moosa,  Sumaiya Nazeen, M. Sohel Rahman, and Rezwana Reaz, "Inferring Strings from Cover Arrays", Discrete Mathematics, Algorithms and Applications 2013, 5(02): 1360005

Conference Publications/Presentations

  • Sumaiya Nazeen and Bonnie Berger, "Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads". ECCB (Applications Track), Greece (2018)
  • Tanaeem M. Moosa, Sumaiya Nazeen, M. Sohel Rahman, and Rezwana Reaz, "Linear Time Inference of Strings from Cover Arrays using a Binary Alphabet". Md. S. Rahman and S.-i. Nakano (eds.) WALCOM 2012. LNCS, vol. 7157, pp. 160-172. Springer, Heidelberg (2012)