News

Fri, 06/11/2021

Check out our latest preprint exploring "The missing link between genetic association and regulatory function."

Sat, 08/22/2020

Talk title: Functional Interpretation of Omics Data for Health and Disease

Abstract: Recent advances in next-generation sequencing technologies have resulted in an explosive growth of diverse omics data. Functional interpretation of such data faces challenges due to their size, multi-...

Fri, 08/07/2020

The Bangladeshi Perspective is an initiative by a Bangladeshi Harvard undergraduate to showcase the talent and narrative stories of inspirational Bangladeshis worldwide and make it accessible to a general public. It's LinkedIn page can be found at...

Thu, 04/02/2020

Talk Title: "A Novel Test for Trend in Rare Variant Burden of Functional Modules Implicated in Diseases"

Mon, 02/24/2020

In this paper, we introduce Carnelian, an end-to-end pipeline for metabolic functional profiling uniquely suited to finding functional trends across diverse datasets. Carnelian is able to find shared metabolic pathways, concordant functional dysbioses, and distinguish Enzyme Commission (EC)...

Sat, 09/07/2019

Title of the talk: Uncovering hidden functional patterns across diverse study populations from whole metagenome sequencing reads with Carnelian

Abstract:
Microbial populations exhibit functional changes in response to different ambient environments. Comparative metagenomic studies...

Fri, 11/30/2018

I gave an invited talk at the Frontiers in Mucosal Immunology (FIMI) symposium at Harvard Medical School on Nov 30.

Wed, 09/12/2018

speaker I presented our recent work titled "Carnelian:  enhanced functional profiling of metagenomic reads...

Mon, 08/20/2018

I gave a talk on our recent work at Arbor Biotech. Title and abstract of the talk are below.

Carnelian: Enhanced functional profiling of metagenomic sequencing reads

Assigning metagenomic sequencing reads to known annotations of biological function (e.g., catalytic...

Mon, 07/23/2018

Check out our new bioRxiv preprint "Carnelian: alignment-free functional binning and abundance estimation of metagenomic reads" at https://doi.org/10.1101/375121